ditnoj-
We have a really nice drum setup in our church, but it has changed very much from our old building to our new. The old building seated about 350-400 and was a perfect rectangle. We used one of those lexan drum shields around the entire kit to minimalize bleeding onto the stage. Then the kit was miced up. I think we were usinf AKG C1000's for overheads, they were pretty close for overheads.
Our new auditorium seats about 2500, so the setup is different. The Lexan shield is gone, but we still have mics on the whole kit. 2 overheads, kick, small condensors on the toms, snare. I could probably look and find out exactly what mics we're using now, I honestly haven't looked at the kit for some time.
So, my only suggestion would to be try out mics on the toms. In a lot of P&W music, it really makes a great sound. Other than that, you have to base your setup on the size of your room and experiment until you get the best, and best controlled, sound you can!
H2H