Is that audio track supposed to be showing the kick *not* standing out?
I do very little recording where I've got a whole band with a full drumset, but when I do, I always resort to a triggered sample to add some oomf. A lot of what you *hear* in the kick is much higher than 69Hz, too (why some kick mics are pretty scooped I think).
What/how are you monitoring during your mixing? It's possible your monitoring setup is leading to incorrect mix decisions, too.