Jeez, I don't know where to start. First take it take it from someone who has probably strung more guitars than the rest of you put together...
You will NOT harm the neck in any way if you remove all the strings. It is the quickest way to go. If the neck doesn't like it you have issues with the neck.
Sparrow those "tone pegs" are called bridge pins. You don't need to cut the strings to get them off. You can if you want but all you are doing is introducing another step and the possibility of damaging the guitar.
When you have the string held by the bridge pin you feed it through the tuners hole and leave enough to give you two windings on the peg. You only need one complete winding but two is fine. Don't put more than two or three on. That equates to about two fingers high off the fingerboard for the low E and three fingers on the high E. When the string is through the tuner. wind it once round the post and hold it down on the nut keeping the tension in the string with your right hand. Wind the string tight. Repeat 5 times. The windings should go DOWN the post. I can re string a guitar in under 3 minutes.
Now to crush some misconceptions.
We have dealt with the tension in the neck thing.
Strings do NOT slip on the tuners. If they do you have bad gears in the tuners.
Do NOT tie or do any fancy fixing on the tuner peg. All your doing is making the thing harder to get off and wasting time and effort. I hate it when people tie the things on. Like I said, strings do NOT slip on the tuner posts. Especially if you have just two windings. Any more and you introduce uneven tension in the winding and in severe cases it will result in string breakage.
The only time you might want to leave a few strings on while changing the others is if you have a floating bridge, an archtop for example. That way you will keep the bridge in the right place and not have to worry about setting the intonation after. Ricky users. Either change one at time or get some blue tack.
You can use a string winder if you want I don't, you don't need that many turns. Like I said 2 on the low E, 2 or 3 max on the rest. How long does that take?
Sparrow, if the nut falls off you need to spot glue it back with a tiny bit of superglue. Just enough to hold it in place.
Don't put all six on loose, do one at a time. If your nut and saddle are well fitted stretching the strings as you describe is not required. Tune up a half tone sharp and then tune down. The string material needs a little time to settle and it will do it in it's own good time..
Next everyone go and learn how to tune your guitar correctly. Can't help with playing I'm afraid, I'm still crap at that myself.
