Yeah, what Bear said is a usual suspect.
Also possible, depending upon further elaboration of what you actually mean by "exporting"...
If you actually mean "mixing down to stereo" and then saving a stereo WAV file, it could be that the mixdown is clipping in places.
If you are exporting to an MP3, it could be the MP3 encoder glitching. Some less-than-top-shelf encoders introduce occasional encoding errors that can range from clicks to howls.
Go back to your Cubase project and look at the tracks at the points in time where the clicks/pops occur. Zoom in on the time line and look for bad edits (places where the wavefrom has a "fault line" in it.)
If there are no obvoius bad edits, then look and see if they are at points in the song where the meter is pushing 0dB because you have two or more tracks with strong peaks in the same location. If so, trim one or more of them down a dB or two before mixing down.
If you can export a WAV file and it sounds OK, but the MP3 file pops at you, try a different encoder or encoder setting.
If none of those work, take two asprin and call us in the morning.
G.