Of course - that's the point of digital audio. I can bring audio into my DAW in Audacity, Adobe Audition, Cubase and Sound Forge. They all process audio differently, but the sound quality is exactly the same. I'd never choose one over the other on anything quality wise - just for what they can do to manipulate the audio. Oddly, the one thing that is slightly different is the visual waveform - they all display them slightly differently - but that's of no consequence.